IL_6SNT_143

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6SNT|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_143 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1292

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6SNT|1|2|G|143
6SNT|1|2|U|144
6SNT|1|2|A|145
6SNT|1|2|U|146
6SNT|1|2|A|147
6SNT|1|2|A|148
6SNT|1|2|C|149
*
6SNT|1|2|G|165
6SNT|1|2|C|166
6SNT|1|2|U|167
6SNT|1|2|A|168
6SNT|1|2|A|169
6SNT|1|2|U|170
6SNT|1|2|A|171
6SNT|1|2|C|172

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain Y

40S ribosomal protein S24-A

Chain at

60S ribosomal protein L24-A