IL_6SNT_150

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6SNT|1|2|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_150 not in the Motif Atlas

Geometric match to IL_5F9R_003

Geometric discrepancy: 0.3926

The information below is about IL_5F9R_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6SNT|1|2|C|275
6SNT|1|2|C|276
*
6SNT|1|2|G|279
6SNT|1|2|U|280
6SNT|1|2|G|281

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain at

60S ribosomal protein L24-A