IL_6SNT_172
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_172 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3558
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6SNT|1|2|G|751
6SNT|1|2|A|752
6SNT|1|2|A|753
6SNT|1|2|A|754
6SNT|1|2|A|755
6SNT|1|2|A|756
6SNT|1|2|A|757
6SNT|1|2|U|758
6SNT|1|2|U|759
*
6SNT|1|2|A|791
6SNT|1|2|U|792
6SNT|1|2|A|793
6SNT|1|2|U|794
6SNT|1|2|U|795
6SNT|1|2|A|796
6SNT|1|2|G|797
6SNT|1|2|C|798
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S9-A
- Chain L
- 40S ribosomal protein S11-A
- Chain W
- 40S ribosomal protein S22-A
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