IL_6SNT_179

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_179 not in the Motif Atlas

Geometric match to IL_3U4M_001

Geometric discrepancy: 0.1121

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6SNT|1|2|U|893
6SNT|1|2|U|894
6SNT|1|2|G|895
*
6SNT|1|2|U|917
6SNT|1|2|U|918
6SNT|1|2|A|919

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A