IL_6SNT_180

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

6SNT|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_180 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1467

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6SNT|1|2|G|895
6SNT|1|2|U|896
6SNT|1|2|C|897
6SNT|1|2|A|898
6SNT|1|2|G|899
*
6SNT|1|2|C|910
6SNT|1|2|U|911
6SNT|1|2|U|912
6SNT|1|2|G|913
6SNT|1|2|G|914
6SNT|1|2|A|915
6SNT|1|2|U|916
6SNT|1|2|U|917

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A