IL_6SNT_183
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6SNT|1|2|C|1096, 6SNT|1|2|U|1098, 6SNT|1|2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_183 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1424
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SNT|1|2|C|1034
6SNT|1|2|G|1035
6SNT|1|2|A|1036
*
6SNT|1|2|U|1095
6SNT|1|2|C|1096
6SNT|1|2|U|1097
6SNT|1|2|U|1098
6SNT|1|2|U|1099
6SNT|1|2|G|1100
6SNT|1|2|G|1101
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain L
- 40S ribosomal protein S11-A
- Chain N
- 40S ribosomal protein S13
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
- Chain b
- 40S ribosomal protein S27-A
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