IL_6SNT_186
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_186 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0946
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6SNT|1|2|G|1111
6SNT|1|2|G|1112
6SNT|1|2|A|1113
6SNT|1|2|G|1114
6SNT|1|2|U|1115
6SNT|1|2|A|1116
6SNT|1|2|U|1117
6SNT|1|2|G|1118
*
6SNT|1|2|U|1129
6SNT|1|2|G|1130
6SNT|1|2|A|1131
6SNT|1|2|A|1132
6SNT|1|2|A|1133
6SNT|1|2|C|1134
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 40S ribosomal protein S23-A
- Chain ac
- L41-A
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