IL_6SNT_213
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6SNT|1|2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_213 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.304
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6SNT|1|2|C|1644
6SNT|1|2|G|1645
6SNT|1|2|C|1646
6SNT|1|2|U|1647
*
6SNT|1|2|A|1753
6SNT|1|2|A|1754
6SNT|1|2|A|1755
6SNT|1|2|A|1756
6SNT|1|2|G|1757
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- mRNA
- Chain X
- 40S ribosomal protein S23-A
- Chain ac
- L41-A
- Chain e
- 40S ribosomal protein S30-A
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