IL_6SNT_224
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_224 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0598
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6SNT|1|3|A|44
6SNT|1|3|C|45
6SNT|1|3|G|46
6SNT|1|3|C|47
6SNT|1|3|A|48
6SNT|1|3|G|49
6SNT|1|3|C|50
6SNT|1|3|G|51
6SNT|1|3|A|52
6SNT|1|3|A|53
6SNT|1|3|A|54
6SNT|1|3|U|55
6SNT|1|3|G|56
6SNT|1|3|C|57
6SNT|1|3|G|58
6SNT|1|3|A|59
6SNT|1|3|U|60
6SNT|1|3|A|61
6SNT|1|3|C|62
6SNT|1|3|G|63
6SNT|1|3|U|64
*
6SNT|1|3|A|96
6SNT|1|3|A|97
6SNT|1|3|U|98
6SNT|1|3|C|99
6SNT|1|3|U|100
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain ai
- 60S ribosomal protein L35-A
- Chain as
- 60S ribosomal protein L25
Coloring options: