IL_6SNT_232
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6SNT|1|4|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_232 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0923
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SNT|1|4|A|72
6SNT|1|4|C|73
6SNT|1|4|C|74
6SNT|1|4|G|75
6SNT|1|4|A|76
6SNT|1|4|G|77
6SNT|1|4|U|78
6SNT|1|4|A|79
6SNT|1|4|G|80
*
6SNT|1|4|C|100
6SNT|1|4|G|101
6SNT|1|4|A|102
6SNT|1|4|A|103
6SNT|1|4|A|104
6SNT|1|4|C|105
6SNT|1|4|U|106
Current chains
- Chain 4
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 60S ribosomal protein L7-A
- Chain p
- 60S ribosomal protein L10
- Chain y
- 60S ribosomal protein L20-A
- Chain z
- 60S ribosomal protein L21-A
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