IL_6SNT_239

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_239 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0854

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6SNT|1|1|G|2823
6SNT|1|1|G|2824
6SNT|1|1|C|2825
6SNT|1|1|U|2826
*
6SNT|1|1|G|2863
6SNT|1|1|A|2864
6SNT|1|1|U|2865
6SNT|1|1|U|2866
6SNT|1|1|C|2867

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ao

60S ribosomal protein L29

Chain p

60S ribosomal protein L10