IL_6SNT_247
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6SNT|1|1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_247 not in the Motif Atlas
- Homologous match to IL_8CRE_057
- Geometric discrepancy: 0.198
- The information below is about IL_8CRE_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6SNT|1|1|U|1218
6SNT|1|1|C|1219
6SNT|1|1|U|1220
6SNT|1|1|A|1221
6SNT|1|1|G|1222
6SNT|1|1|A|1223
6SNT|1|1|C|1224
6SNT|1|1|A|1225
6SNT|1|1|G|1226
*
6SNT|1|1|C|1283
6SNT|1|1|C|1284
6SNT|1|1|G|1285
6SNT|1|1|A|1286
6SNT|1|1|A|1287
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ad
- Ubiquitin-60S ribosomal protein L40
- Chain y
- 60S ribosomal protein L20-A
Coloring options: