IL_6SPB_004
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6SPB|1|A|U|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPB_004 not in the Motif Atlas
- Homologous match to IL_4WF9_004
- Geometric discrepancy: 0.1138
- The information below is about IL_4WF9_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6SPB|1|A|G|81
6SPB|1|A|G|82
6SPB|1|A|G|83
6SPB|1|A|A|84
6SPB|1|A|G|85
*
6SPB|1|A|C|98
6SPB|1|A|U|99
6SPB|1|A|U|100
6SPB|1|A|U|101
6SPB|1|A|G|102
6SPB|1|A|A|103
6SPB|1|A|U|104
6SPB|1|A|C|105
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L29
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