IL_6SPB_009

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_009 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.1564

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6SPB|1|A|U|287
6SPB|1|A|A|288
6SPB|1|A|G|289
*
6SPB|1|A|C|337
6SPB|1|A|G|338
6SPB|1|A|A|339
6SPB|1|A|A|340
6SPB|1|A|A|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24