IL_6SPB_029
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGCUAG*CAAACC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPB_029 not in the Motif Atlas
- Geometric match to IL_6DVK_004
- Geometric discrepancy: 0.3863
- The information below is about IL_6DVK_004
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SPB|1|A|G|863
6SPB|1|A|G|864
6SPB|1|A|C|865
6SPB|1|A|U|866
6SPB|1|A|A|867
6SPB|1|A|G|868
*
6SPB|1|A|C|887
6SPB|1|A|A|888
6SPB|1|A|A|889
6SPB|1|A|A|890
6SPB|1|A|C|891
6SPB|1|A|C|892
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: