IL_6SPB_043

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6SPB|1|A|U|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_043 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6SPB|1|A|C|1195
6SPB|1|A|U|1196
6SPB|1|A|G|1197
6SPB|1|A|U|1198
6SPB|1|A|G|1199
6SPB|1|A|A|1200
6SPB|1|A|A|1201
6SPB|1|A|G|1202
*
6SPB|1|A|U|1221
6SPB|1|A|G|1222
6SPB|1|A|G|1223
6SPB|1|A|A|1224
6SPB|1|A|G|1225

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20