IL_6SPB_052

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUAG*UGAUG

Length

9 nucleotides

Bulged bases

6SPB|1|A|U|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_052 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1817

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SPB|1|A|C|1424
6SPB|1|A|U|1425
6SPB|1|A|A|1426
6SPB|1|A|G|1427
*
6SPB|1|A|U|1541
6SPB|1|A|G|1542
6SPB|1|A|A|1543
6SPB|1|A|U|1544
6SPB|1|A|G|1545

Current chains

Chain A

23S ribosomal RNA

Nearby chains