IL_6SPB_113

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_113 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1143

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6SPB|1|A|U|1838
6SPB|1|A|U|1839
6SPB|1|A|A|1840
6SPB|1|A|A|1841
6SPB|1|A|U|1842
6SPB|1|A|U|1843
6SPB|1|A|G|1844
6SPB|1|A|A|1845
6SPB|1|A|U|1846
6SPB|1|A|G|1847
*
6SPB|1|A|U|1869
6SPB|1|A|U|1870
6SPB|1|A|G|1871
6SPB|1|A|A|1872
6SPB|1|A|U|1873
6SPB|1|A|C|1874
6SPB|1|A|G|1875
6SPB|1|A|A|1876
6SPB|1|A|A|1877
6SPB|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains