IL_6SPC_010
3D structure
- PDB id
- 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6SPC|1|a|U|167
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPC_010 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1136
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SPC|1|a|G|141
6SPC|1|a|G|142
6SPC|1|a|A|143
6SPC|1|a|U|144
6SPC|1|a|A|145
6SPC|1|a|A|146
6SPC|1|a|C|147
*
6SPC|1|a|G|162
6SPC|1|a|C|163
6SPC|1|a|U|164
6SPC|1|a|A|165
6SPC|1|a|A|166
6SPC|1|a|U|167
6SPC|1|a|A|168
6SPC|1|a|C|169
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain t
- 30S ribosomal protein S20
Coloring options: