IL_6SPC_049

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAGAAG*CCACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPC_049 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3029

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SPC|1|a|C|1424
6SPC|1|a|A|1425
6SPC|1|a|G|1426
6SPC|1|a|A|1427
6SPC|1|a|A|1428
6SPC|1|a|G|1429
*
6SPC|1|a|C|1460
6SPC|1|a|C|1461
6SPC|1|a|A|1462
6SPC|1|a|C|1463
6SPC|1|a|G|1464

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20