IL_6SPC_057

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UAGU*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPC_057 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.3282

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SPC|1|a|U|1434
6SPC|1|a|A|1435
6SPC|1|a|G|1436
6SPC|1|a|U|1437
*
6SPC|1|a|G|1452
6SPC|1|a|A|1453
6SPC|1|a|C|1454
6SPC|1|a|G|1455

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20