IL_6SPD_006

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_006 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1153

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6SPD|1|A|U|239
6SPD|1|A|U|240
6SPD|1|A|A|241
6SPD|1|A|G|242
6SPD|1|A|U|243
6SPD|1|A|A|244
6SPD|1|A|G|245
*
6SPD|1|A|C|253
6SPD|1|A|G|254
6SPD|1|A|A|255
6SPD|1|A|A|256
6SPD|1|A|C|257
6SPD|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L35

Chain L

50S ribosomal protein L15