IL_6SPD_013

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6SPD|1|A|G|791, 6SPD|1|A|G|795

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_013 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1578

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6SPD|1|A|G|664
6SPD|1|A|A|665
6SPD|1|A|A|666
6SPD|1|A|A|667
6SPD|1|A|C|668
*
6SPD|1|A|G|789
6SPD|1|A|A|790
6SPD|1|A|G|791
6SPD|1|A|A|792
6SPD|1|A|U|793
6SPD|1|A|A|794
6SPD|1|A|G|795
6SPD|1|A|C|796

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15