IL_6SPD_024
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_024 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.333
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SPD|1|A|G|853
6SPD|1|A|C|854
6SPD|1|A|A|855
6SPD|1|A|C|856
6SPD|1|A|U|857
6SPD|1|A|G|858
*
6SPD|1|A|C|897
6SPD|1|A|A|898
6SPD|1|A|A|899
6SPD|1|A|A|900
6SPD|1|A|C|901
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
Coloring options: