IL_6SPD_030

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

6SPD|1|A|A|999

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_030 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1308

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6SPD|1|A|U|994
6SPD|1|A|C|995
6SPD|1|A|C|996
6SPD|1|A|C|997
6SPD|1|A|A|998
6SPD|1|A|A|999
6SPD|1|A|A|1000
6SPD|1|A|G|1001
*
6SPD|1|A|C|1141
6SPD|1|A|A|1142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20