IL_6SPD_041

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6SPD|1|A|U|1198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_041 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1526

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6SPD|1|A|C|1195
6SPD|1|A|U|1196
6SPD|1|A|G|1197
6SPD|1|A|U|1198
6SPD|1|A|G|1199
6SPD|1|A|A|1200
6SPD|1|A|A|1201
6SPD|1|A|G|1202
*
6SPD|1|A|U|1221
6SPD|1|A|G|1222
6SPD|1|A|G|1223
6SPD|1|A|A|1224
6SPD|1|A|G|1225

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20