IL_6SPD_044

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCAAC*GAC

Length

8 nucleotides

Bulged bases

6SPD|1|A|A|1319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_044 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1411

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6SPD|1|A|G|1306
6SPD|1|A|C|1307
6SPD|1|A|A|1308
6SPD|1|A|A|1309
6SPD|1|A|C|1310
*
6SPD|1|A|G|1318
6SPD|1|A|A|1319
6SPD|1|A|C|1320

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22