IL_6SPD_050

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAG*UGAUG

Length

9 nucleotides

Bulged bases

6SPD|1|A|U|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_050 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1985

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SPD|1|A|C|1424
6SPD|1|A|U|1425
6SPD|1|A|A|1426
6SPD|1|A|G|1427
*
6SPD|1|A|U|1541
6SPD|1|A|G|1542
6SPD|1|A|A|1543
6SPD|1|A|U|1544
6SPD|1|A|G|1545

Current chains

Chain A

23S ribosomal RNA

Nearby chains