IL_6SPD_051

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_051 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1192

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6SPD|1|A|U|1455
6SPD|1|A|A|1456
6SPD|1|A|A|1457
6SPD|1|A|G|1458
*
6SPD|1|A|U|1507
6SPD|1|A|G|1508
6SPD|1|A|A|1509
6SPD|1|A|U|1510
6SPD|1|A|G|1511

Current chains

Chain A

23S ribosomal RNA

Nearby chains