IL_6SPD_059
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6SPD|1|A|G|1979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_059 not in the Motif Atlas
- Homologous match to IL_4WF9_065
- Geometric discrepancy: 0.1467
- The information below is about IL_4WF9_065
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6SPD|1|A|A|1659
6SPD|1|A|C|1660
6SPD|1|A|U|1661
6SPD|1|A|A|1662
6SPD|1|A|G|1663
6SPD|1|A|G|1664
*
6SPD|1|A|C|1977
6SPD|1|A|U|1978
6SPD|1|A|G|1979
6SPD|1|A|U|1980
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
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