IL_6SPD_093
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6SPD|1|A|G|2766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_093 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.1058
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6SPD|1|A|U|2623
6SPD|1|A|U|2624
6SPD|1|A|G|2625
6SPD|1|A|A|2626
6SPD|1|A|G|2627
*
6SPD|1|A|C|2760
6SPD|1|A|A|2761
6SPD|1|A|A|2762
6SPD|1|A|G|2763
6SPD|1|A|A|2764
6SPD|1|A|U|2765
6SPD|1|A|G|2766
6SPD|1|A|A|2767
6SPD|1|A|G|2768
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
Coloring options: