IL_6SPD_104
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGAACC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- 6SPD|1|B|A|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_104 not in the Motif Atlas
- Homologous match to IL_5J7L_356
- Geometric discrepancy: 0.5464
- The information below is about IL_5J7L_356
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SPD|1|B|G|22
6SPD|1|B|G|23
6SPD|1|B|A|24
6SPD|1|B|A|25
6SPD|1|B|C|26
6SPD|1|B|C|27
*
6SPD|1|B|G|55
6SPD|1|B|A|56
6SPD|1|B|A|57
6SPD|1|B|A|58
6SPD|1|B|C|59
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
Coloring options: