IL_6SPD_106
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AUCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_106 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1703
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6SPD|1|B|A|33
6SPD|1|B|U|34
6SPD|1|B|C|35
6SPD|1|B|C|36
6SPD|1|B|C|37
*
6SPD|1|B|G|43
6SPD|1|B|A|44
6SPD|1|B|A|45
6SPD|1|B|C|46
6SPD|1|B|U|47
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
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