IL_6SPD_112

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGGUC*GAUCG

Length

11 nucleotides

Bulged bases

6SPD|1|A|U|2190

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_112 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3386

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6SPD|1|A|C|2189
6SPD|1|A|U|2190
6SPD|1|A|G|2191
6SPD|1|A|G|2192
6SPD|1|A|U|2193
6SPD|1|A|C|2194
*
6SPD|1|A|G|2204
6SPD|1|A|A|2205
6SPD|1|A|U|2206
6SPD|1|A|C|2207
6SPD|1|A|G|2208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28