IL_6SPD_116
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUUAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6SPD|1|A|A|1036
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_116 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2256
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6SPD|1|A|C|1033
6SPD|1|A|U|1034
6SPD|1|A|U|1035
6SPD|1|A|A|1036
6SPD|1|A|G|1037
6SPD|1|A|A|1038
6SPD|1|A|C|1039
6SPD|1|A|A|1040
6SPD|1|A|G|1041
*
6SPD|1|A|U|1098
6SPD|1|A|C|1099
6SPD|1|A|G|1100
6SPD|1|A|A|1101
6SPD|1|A|G|1102
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
Coloring options: