IL_6SPE_013
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 6SPE|1|a|U|238, 6SPE|1|a|C|274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPE_013 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1672
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SPE|1|a|G|236
6SPE|1|a|A|237
6SPE|1|a|U|238
6SPE|1|a|U|239
6SPE|1|a|A|240
6SPE|1|a|G|241
*
6SPE|1|a|C|271
6SPE|1|a|G|272
6SPE|1|a|A|273
6SPE|1|a|C|274
6SPE|1|a|G|275
6SPE|1|a|A|276
6SPE|1|a|U|277
6SPE|1|a|C|278
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
Coloring options: