IL_6SPE_023

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6SPE|1|a|A|566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPE_023 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1196

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6SPE|1|a|C|563
6SPE|1|a|G|564
6SPE|1|a|U|565
6SPE|1|a|A|566
6SPE|1|a|A|567
6SPE|1|a|A|568
6SPE|1|a|G|569
*
6SPE|1|a|C|874
6SPE|1|a|G|875

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17