IL_6SPE_033

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPE_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1235

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6SPE|1|a|C|773
6SPE|1|a|A|774
6SPE|1|a|A|775
6SPE|1|a|A|776
6SPE|1|a|C|777
*
6SPE|1|a|G|793
6SPE|1|a|G|794
6SPE|1|a|U|795
6SPE|1|a|A|796
6SPE|1|a|G|797

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11

Chain u

30S ribosomal protein S21