IL_6SPF_006
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_006 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0687
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SPF|1|A|G|188
6SPF|1|A|G|189
6SPF|1|A|A|190
6SPF|1|A|A|191
6SPF|1|A|C|192
6SPF|1|A|U|193
6SPF|1|A|G|194
*
6SPF|1|A|C|201
6SPF|1|A|U|202
6SPF|1|A|A|203
6SPF|1|A|A|204
6SPF|1|A|G|205
6SPF|1|A|U|206
6SPF|1|A|A|207
6SPF|1|A|C|208
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain 5
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
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