IL_6SPF_034
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UUAAGUG*CUCAAA
- Length
- 13 nucleotides
- Bulged bases
- 6SPF|1|A|C|1132
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_034 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.1486
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
6SPF|1|A|U|1008
6SPF|1|A|U|1009
6SPF|1|A|A|1010
6SPF|1|A|A|1011
6SPF|1|A|G|1012
6SPF|1|A|U|1013
6SPF|1|A|G|1014
*
6SPF|1|A|C|1130
6SPF|1|A|U|1131
6SPF|1|A|C|1132
6SPF|1|A|A|1133
6SPF|1|A|A|1134
6SPF|1|A|A|1135
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
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