IL_6SPF_047

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6SPF|1|A|U|1407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_047 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1104

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6SPF|1|A|C|1404
6SPF|1|A|G|1405
6SPF|1|A|A|1406
6SPF|1|A|U|1407
6SPF|1|A|G|1408
*
6SPF|1|A|C|1567
6SPF|1|A|U|1568
6SPF|1|A|A|1569
6SPF|1|A|A|1570
6SPF|1|A|G|1571

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains