IL_6SPF_055

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_055 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.079

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6SPF|1|A|G|1641
6SPF|1|A|A|1642
6SPF|1|A|G|1643
6SPF|1|A|A|1644
6SPF|1|A|A|1645
6SPF|1|A|C|1646
*
6SPF|1|A|G|1991
6SPF|1|A|A|1992
6SPF|1|A|C|1993

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17