IL_6SPF_058
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6SPF|1|A|G|1979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_058 not in the Motif Atlas
- Homologous match to IL_5J7L_307
- Geometric discrepancy: 0.0738
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6SPF|1|A|A|1659
6SPF|1|A|C|1660
6SPF|1|A|U|1661
6SPF|1|A|A|1662
6SPF|1|A|G|1663
6SPF|1|A|G|1664
*
6SPF|1|A|C|1977
6SPF|1|A|U|1978
6SPF|1|A|G|1979
6SPF|1|A|U|1980
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
Coloring options: