IL_6SPF_059

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6SPF|1|A|G|1689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_059 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0863

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6SPF|1|A|C|1676
6SPF|1|A|G|1677
6SPF|1|A|U|1678
6SPF|1|A|A|1679
6SPF|1|A|A|1680
6SPF|1|A|C|1681
*
6SPF|1|A|G|1686
6SPF|1|A|G|1687
6SPF|1|A|A|1688
6SPF|1|A|G|1689
6SPF|1|A|A|1690
6SPF|1|A|A|1691
6SPF|1|A|G|1692

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA