IL_6SPF_076

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUAGGUGGGAGGCUUUGAAGCGUG*CGCGUGGAGCCAUCC

Length

40 nucleotides

Bulged bases

6SPF|1|A|A|2106, 6SPF|1|A|U|2117, 6SPF|1|A|C|2151

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|G|2103
6SPF|1|A|A|2104
6SPF|1|A|U|2105
6SPF|1|A|A|2106
6SPF|1|A|G|2107
6SPF|1|A|G|2108
6SPF|1|A|U|2109
6SPF|1|A|G|2110
6SPF|1|A|G|2111
6SPF|1|A|G|2112
6SPF|1|A|A|2113
6SPF|1|A|G|2114
6SPF|1|A|G|2115
6SPF|1|A|C|2116
6SPF|1|A|U|2117
6SPF|1|A|U|2118
6SPF|1|A|U|2119
6SPF|1|A|G|2120
6SPF|1|A|A|2121
6SPF|1|A|A|2122
6SPF|1|A|G|2123
6SPF|1|A|C|2124
6SPF|1|A|G|2125
6SPF|1|A|U|2126
6SPF|1|A|G|2127
*
6SPF|1|A|C|2138
6SPF|1|A|G|2139
6SPF|1|A|C|2140
6SPF|1|A|G|2141
6SPF|1|A|U|2142
6SPF|1|A|G|2143
6SPF|1|A|G|2144
6SPF|1|A|A|2145
6SPF|1|A|G|2146
6SPF|1|A|C|2147
6SPF|1|A|C|2148
6SPF|1|A|A|2149
6SPF|1|A|U|2150
6SPF|1|A|C|2151
6SPF|1|A|C|2152

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains