IL_6SPF_079

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6SPF|1|A|U|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_079 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.3702

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6SPF|1|A|U|2388
6SPF|1|A|U|2389
6SPF|1|A|C|2390
*
6SPF|1|A|G|2401
6SPF|1|A|G|2402

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L33

Chain 5

50S ribosomal protein L35

Chain L

50S ribosomal protein L15