IL_6SPF_096

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUGGGAACUUGAUUCCCCUGAAG*CGUGAG

Length

29 nucleotides

Bulged bases

6SPF|1|A|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|C|2776
6SPF|1|A|U|2777
6SPF|1|A|G|2778
6SPF|1|A|G|2779
6SPF|1|A|G|2780
6SPF|1|A|A|2781
6SPF|1|A|A|2782
6SPF|1|A|C|2783
6SPF|1|A|U|2784
6SPF|1|A|U|2785
6SPF|1|A|G|2786
6SPF|1|A|A|2787
6SPF|1|A|U|2788
6SPF|1|A|U|2789
6SPF|1|A|C|2790
6SPF|1|A|C|2791
6SPF|1|A|C|2792
6SPF|1|A|C|2793
6SPF|1|A|U|2794
6SPF|1|A|G|2795
6SPF|1|A|A|2796
6SPF|1|A|A|2797
6SPF|1|A|G|2798
*
6SPF|1|A|C|2876
6SPF|1|A|G|2877
6SPF|1|A|U|2878
6SPF|1|A|G|2879
6SPF|1|A|A|2880
6SPF|1|A|G|2881

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22