IL_6SPF_110

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_110 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.1979

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6SPF|1|a|C|126
6SPF|1|a|U|127
6SPF|1|a|G|128
6SPF|1|a|C|129
6SPF|1|a|C|130
*
6SPF|1|a|G|221
6SPF|1|a|A|222
6SPF|1|a|U|223
6SPF|1|a|G|224

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20