IL_6SPF_120

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAGGAAG*UGACGUUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|G|440
6SPF|1|a|G|441
6SPF|1|a|A|442
6SPF|1|a|G|443
6SPF|1|a|G|444
6SPF|1|a|A|445
6SPF|1|a|A|446
6SPF|1|a|G|447
*
6SPF|1|a|U|474
6SPF|1|a|G|475
6SPF|1|a|A|476
6SPF|1|a|C|477
6SPF|1|a|G|478
6SPF|1|a|U|479
6SPF|1|a|U|480
6SPF|1|a|A|481
6SPF|1|a|C|482

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16