IL_6SPF_123

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGGCUAACUU*AGG

Length

13 nucleotides

Bulged bases

6SPF|1|a|U|502, 6SPF|1|a|A|503, 6SPF|1|a|C|505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|C|498
6SPF|1|a|G|499
6SPF|1|a|G|500
6SPF|1|a|C|501
6SPF|1|a|U|502
6SPF|1|a|A|503
6SPF|1|a|A|504
6SPF|1|a|C|505
6SPF|1|a|U|506
6SPF|1|a|U|507
*
6SPF|1|a|A|533
6SPF|1|a|G|534
6SPF|1|a|G|535

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12